diff --git a/esphome/components/store_yaml/__init__.py b/esphome/components/store_yaml/__init__.py
index bc73db77ea..52b833a2a8 100644
--- a/esphome/components/store_yaml/__init__.py
+++ b/esphome/components/store_yaml/__init__.py
@@ -1,7 +1,9 @@
+import copy
 import esphome.codegen as cg
 import esphome.config_validation as cv
 from esphome import automation, yaml_util
 from esphome.core import CORE
+from esphome.config import strip_default_ids
 
 from esphome.const import (
     CONF_ID,
@@ -27,7 +29,7 @@ async def to_code(config):
     var = cg.new_Pvariable(config[CONF_ID])
     store_yaml = await cg.register_component(var, config)
     cg.add(store_yaml.set_show_in_dump_config(config[CONF_SHOW_IN_DUMP_CONFIG]))
-    yaml = yaml_util.load_yaml(CORE.config_path)
+    yaml = strip_default_ids(copy.deepcopy(CORE.config))
     dump = yaml_util.dump(yaml, show_secrets=config[CONF_SHOW_SECRETS])
     cg.add(store_yaml.set_yaml(dump))