This function uses Xapian's Compactor machinery to compact the notmuch
database. The compacted database is built in a temporary directory and
later moved into place while the original uncompacted database is
preserved.
Signed-off-by: Ben Gamari <bgamari.foss@gmail.com>
As explained by Jeffrey Stedfast, the author of GMime, quoted in [1]:
> Passing the GMIME_ENABLE_RFC2047_WORKAROUNDS flag to g_mime_init()
> *should* solve the decoding problem mentioned in the thread. This
> flag should be safe to pass into g_mime_init() without any bad side
> effects and my unit tests do test that code-path.
The thread being referred to is [2].
[1] id:87bo56viyo.fsf@nikula.org
[2] id:08cb1dcd-c5db-4e33-8b09-7730cb3d59a2@gmail.com
Presently, the code which finds the parent of a message as it is being
added to the database assumes that the first Message-ID-like substring
of the In-Reply-To header is the parent Message ID. Some mail clients,
however, put stuff other than the Message-ID of the parent in the
In-Reply-To header, such as the email address of the sender of the
parent. This can fool notmuch.
The updated algorithm prefers the last Message ID in the References
header. The References header lists messages oldest-first, so the last
Message ID is the parent (RFC2822, p. 24). The References header is
also less likely to be in a non-standard
syntax (http://cr.yp.to/immhf/thread.html,
http://www.jwz.org/doc/threading.html). In case the References header
is not to be found, fall back to the old behavior.
V2 of this patch, incorporating feedback from Jani and (indirectly)
Austin.
Previously, we would treat multi-message mboxes as one giant email,
which, besides the obvious incorrect indexing, often led to
out-of-memory errors for archival mboxes. Now we explicitly reject
multi-message mboxes. For historical reasons, we retain support for
single-message mboxes, but official deprecate this behavior.
Add a custom value range processor to enable date and time searches of
the form date:since..until, where "since" and "until" are expressions
understood by the previously added date/time parser, to restrict the
results to messages within a particular time range (based on the Date:
header).
If "since" or "until" describes date/time at an accuracy of days or
less, the values are rounded according to the accuracy, towards past
for "since" and towards future for "until". For example,
date:november..yesterday would match from the beginning of November
until the end of yesterday. Expressions such as date:today..today
means since the beginning of today until the end of today.
Open-ended ranges are supported (since Xapian 1.2.1), i.e. you can
specify date:..until or date:since.. to not limit the start or end
date, respectively.
CAVEATS:
Xapian does not support spaces in range expressions. You can replace
the spaces with '_', or (in most cases) '-', or (in some cases) leave
the spaces out altogether.
Entering date:expr without ".." (for example date:yesterday) will not
work as you might expect. You can achieve the expected result by
duplicating the expr both sides of ".." (for example
date:yesterday..yesterday).
Open-ended ranges won't work with pre-1.2.1 Xapian, but they don't
produce an error either.
Signed-off-by: Jani Nikula <jani@nikula.org>
Previously, _notmuch_database_filename_to_direntry would abort with an
internal error when called on a read-only database. Now that creating
the directory document is optional,
notmuch_database_find_message_by_filename can disable directory
document creation (as it should) and, as a result, not abort on
read-only databases.
Using the new support from _notmuch_directory_create, this makes
notmuch_database_get_directory a read-only operation that simply
returns the directory object if it exists or NULL otherwise. This
also means that notmuch_database_get_directory can work on read-only
databases.
This change breaks the directory mtime workaround in notmuch-new.c by
fixing the exact issue it was working around. This permits mtime
update races to prevent scans of changed directories, which
non-deterministically breaks a few tests. The next patch fixes this.
Now _notmuch_database_filename_to_direntry takes a flags argument and
can indicate if the necessary directory documents do not exist.
Again, callers have been updated, but retain their original behavior.
Now _notmuch_database_find_directory_id takes a flags argument, which
it passes through to _notmuch_directory_create and can indicate if the
directory does not exist. Again, callers have been updated, but
retain their original behavior.
Previously this function would create directory documents if they
didn't exist. As a result, it could only be used on writable
databases. This adds an argument to make creation optional and to
make this function work on read-only databases. We use a flag
argument to avoid a bare boolean and to permit future expansion.
Both callers have been updated, but currently retain the old behavior.
We'll take advantage of the new argument in the following patches.
Previously, notmuch_database_get_directory had no way to indicate how
it had failed. This changes its prototype to return a status code and
set an out-argument to the retrieved directory, like similar functions
in the library API. This does *not* change its currently broken
behavior of creating directory objects when they don't exist, but it
does document it and paves the way for fixing this. Also, it can now
check for a read-only database and return
NOTMUCH_STATUS_READ_ONLY_DATABASE instead of crashing.
In the interest of atomicity, this also updates calls from the CLI so
that notmuch still compiles.
This is the notmuch_database_create equivalent of the previous change.
In this case, there were places where errors were not being propagated
correctly in notmuch_database_create or in calls to it. These have
been fixed, using the new status value.
It has been a long-standing issue that notmuch_database_open doesn't
return any indication of why it failed. This patch changes its
prototype to return a notmuch_status_t and set an out-argument to the
database itself, like other functions that return both a status and an
object.
In the interest of atomicity, this also updates every use in the CLI
so that notmuch still compiles. Since this patch does not update the
bindings, the Python bindings test fails.
Formerly notmuch_database_close closed the xapian database and
destroyed the talloc structure associated with the notmuch database
object. Split notmuch_database_close into notmuch_database_close and
notmuch_database_destroy.
This makes it possible for long running programs to close the xapian
database and thus release the lock associated with it without
destroying the data structures obtained from it.
This also makes the api more consistent since every other data
structure has a destructor function.
The comments in notmuch.h are a courtesy of Austin Clements.
Signed-off-by: Justus Winter <4winter@informatik.uni-hamburg.de>
Formerly it was possible for *message_ret to be left
uninitialized. The documentation however clearly states that "[o]n any
failure or when the message is not found, this function initializes
'*message' to NULL".
Signed-off-by: Justus Winter <4winter@informatik.uni-hamburg.de>
Formerly the xapian database object was deleted and closed in its
destructor once the object was garbage collected. Explicitly call
close() so that the database and the associated lock is released
immediately.
The comment is a courtesy of Austin Clements.
Signed-off-by: Justus Winter <4winter@informatik.uni-hamburg.de>
Previously opening a notmuch database in read write mode that has been
locked resulted in the notmuch_database_open function executing
notmuch_database_close as a cleanup function. notmuch_database_close
failed to check whether the xapian database has in fact been created.
Add a check whether the xapian database object has actually been
created before trying to call its flush method.
Signed-off-by: Justus Winter <4winter@informatik.uni-hamburg.de>
Previously, we manually "free"d various pointers in
notmuch_database_open. Use a local talloc context instead to simplify
cleanup and eliminate various NULL pointer initializations and
conditionals.
In the error-handling paths of notmuch_database_open, we call
notmuch_database_close, which "delete"s several objects referenced by
the notmuch_database_t object. However, some of these pointers may be
uninitialized, resulting in undefined behavior. Hence, allocate the
notmuch_database_t with talloc_zero to make sure these pointers are
NULL so that "delete"ing them is harmless.
As reported in
id:"CAEbOPGyuHnz4BPtDutnTPUHcP3eYcRCRkXhYoJR43RUMw671+g@mail.gmail.com"
sometimes gmime tries to access a NULL pointer, e.g. g_mime_iconv_open()
tries to access iconv_cache that is NULL if g_mime_init() is not called.
This causes notmuch to segfault when calling gmime functions.
Calling g_mime_init() initializes iconv_cache and others variables needed
by gmime, making sure they are initialized when notmuch calls gmime
functions.
Test marked fix by db.
Commit 567bcbc2 introduced two new values for each message (content of the
"From" and "Subject" headers), but the comments about the database schema had
not been updated accordingly.
This is a rebase and cleanup of Istvan Marko's patch from
id:m3pqnj2j7a.fsf@zsu.kismala.com
Search retrieves these headers for every message in the search
results. Previously, this required opening and parsing every message
file. Storing them directly in the database significantly reduces IO
and computation, speeding up search by between 50% and 10X.
Taking full advantage of this requires a database rebuild, but it will
fall back to the old behavior for messages that do not have headers
stored in the database.
Apparently the method was renamed in Xapian 1.1.0 but the old method
name will stay around for a while. It seems better to stick with the
old name to make notmuch compile with older versions of Xapian, at
least for now.
We keep the lib/xutil.c version. As a consequence, also factor out
_internal_error and associated macros. It might be overkill to make a
new file error_util.c for this, but _internal_error does not really
belong in database.cc.
Previously, the functions notmuch_database_find_message() and
notmuch_database_find_message_by_filename() functions did not properly
report error condition to the library user.
For more information, read the thread on the notmuch mailing list
starting with my mail "id:871uv2unfd.fsf@gmail.com"
Make these functions accept a pointer to 'notmuch_message_t' as argument
and return notmuch_status_t which may be used to check for any error
condition.
restore: Modify for the new notmuch_database_find_message()
new: Modify for the new notmuch_database_find_message_by_filename()
Adding a message may involve changes to multiple database documents,
and thus needs to be done in a transaction. This makes add_message
(and, I think, the whole library) atomicity-safe: library callers only
needs to use atomic sections if they needs atomicity across multiple
library calls.
notmuch_database_find_message_by_filename is mostly stolen from
notmuch_database_remove_message, so this patch also vastly simplfies
the latter using the former.
This API is also useful in its own right and will be used in a later
patch for eager maildir flag synchronization.
Previously, notmuch_database_remove_message would remove the message
file name, sync the change to the message document, re-find the
message document, and then delete it if there were no more file names.
An interruption after sync'ing would result in a file-name-less,
permanently un-removable zombie message that would produce errors and
odd results in searches. We could wrap this in an atomic section, but
it's much simpler to eliminate the round-about approach and just
delete the message document instead of sync'ing it if we removed the
last filename.
notmuch_database_t now keeps a nesting count and we only start a
transaction or commit for the outermost atomic section.
Introduces a new error, NOTMUCH_STATUS_UNBALANCED_ATOMIC.
Various typo fixes in comments within the source code.
Signed-off-by: Pieter Praet <pieter@praet.org>
Edited-by: Carl Worth <cworth@cworth.org> Restricted to just
source-code comments, (and fixed fix of "descriptios" to "descriptors"
rather than "descriptions").
Replace _notmuch_convert_tags with this and simplify
_create_filenames_for_terms_with_prefix. This will also come in handy
shortly to get the message file name list.
This replaces the guts of the filename list and tag list, making those
interfaces simple iterators over the generic string list. The
directory, message filename, and tags-related code now build generic
string lists and then wraps them in specific iterators. The real wins
come in later patches, when we use these for even more generic
functionality.
As a nice side-effect, this also eliminates the annoying dependency on
GList in the tag list.
A new "folder:" prefix in the query string can now be used to match
the directories in which mail files are stored.
The addition of this feature causes the recently added
search-by-folder tests to now pass.
Using the local talloc context ensures that the memory we are using
here will be freed shortly, (rather than hanging on for a long time
with the notmuch database object).
This rather ugly hack was recently obviated by the removal of the
notmuch_database_set_maildir_sync function. Now, clients must make
explicit calls to do any syncrhonization between maildir flags and
tags. So the library no longer needs to worry about doing inconsistent
synchronization while a message is only partially added.
Instead of having an API for setting a library-wide flag for
synchronization (notmuch_database_set_maildir_sync) we instead
implement maildir synchronization with two new library functions:
notmuch_message_maildir_flags_to_tags
and notmuch_message_tags_to_maildir_flags
These functions are nicely documented here, (though the implementation
does not quite match the documentation yet---as plainly evidenced by
the current results of the test suite).
This adds group [maildir] and key 'synchronize_flags' to the
configuration file. Its value enables (true) or diables (false) the
synchronization between notmuch tags and maildir flags. By default,
the synchronization is disabled.
This patch allows bi-directional synchronization between maildir
flags and certain tags. The flag-to-tag mapping is defined by flag2tag
array.
The synchronization works this way:
1) Whenever notmuch new is executed, the following happens:
o New messages are tagged with configured new_tags.
o For new or renamed messages with maildir info present in the file
name, the tags defined in flag2tag are either added or removed
depending on the flags from the file name.
2) Whenever notmuch tag (or notmuch restore) is executed, a new set of
flags based on the tags is constructed for every message and a new
file name is prepared based on the old file name but with the new
flags. If the flags differs and the old message was in 'new'
directory then this is replaced with 'cur' in the new file name. If
the new and old file names differ, the file is renamed and notmuch
database is updated accordingly.
The rename happens before the database is updated. In case of crash
between rename and database update, the next run of notmuch new
brings the database in sync with the mail store again.
These various functions and data are all used only locally, so should
be marked static. Ensuring we get these right will avoid us accidentally
leaking unintended symbols through the library interface.
Thanks to the new git-based test suite, it's easy to run the whole
test suite in valgrind, (simply "make test OPTIONS="--valgrind"), and
doing so showed this obvious use-after-free bug, (triggered by the
thread-order tests).
Scott Henson reported an internal error that occurred when he tried to
add a message that referenced another message with a message ID well
over 300 characters in length. The bug here was running into a Xapian
limit for the length of metadata key names, (which is even more
restrictive than the Xapian limit for the length of terms).
We fix this by noticing long message ID values and instead using a
message ID of the form "notmuch-sha1-<sha1_sum_of_message_id>". That
is, we use SHA1 to generate a compressed, (but still unique), version
of the message ID.
We add support to the test suite to exercise this fix. The tests add a
message referencing the long message ID, then add the message with the
long message ID, then finally add another message referencing the long
ID. Each of these tests exercise different code paths where the
special handling is implemented.
A final test ensures that all three messages are stitched together
into a single thread---guaranteeing that the three code paths all act
consistently.
Previously we were using Xapian's add_document to allocate document ID
values for notmuch_message_t objects. This had the drawback of adding
a partially constructed mail document to the database. If notmuch was
subsequently interrupted before fully populating this document, then
later runs would be quite confused when seeing the partial documents.
There are reports from the wild of people hitting internal errors of
the form "Message ... has no thread ID" for example, (which is
currently an unrecoverable error).
We fix this by manually allocating document IDs without adding
documents. With this change, we never call Xapian's add_document
method, but only replace_document with either the current document ID
of a message or a new one that we have allocated.
Our current approach is for top-level entry poitns in the library
to have try/catch blocks that catch any Xapian exception and print
a message. Add a few missing blocks and fix up the documentation.
Previously, we were only adding the reference terms for cases where
the referenced message did not yet exist in the database. For thread
presentation, it's useful to have the connection information provided
by the references, even when the messages are present. So add this
term unconditionally.
This function was recently modified, (to include a metadata lookup for
a message's thread ID before looking for parent/child thread IDs), but
the documentation wasn't updated. Fix that.
There are two primary cases in this function, (the message exists in
the database or it does not). Previously the code for these two cases
was split and intermingled with goto-spaghetti connections.
This allows us to thread messages even when we receive them out of
order, or never receive the root.
The thread ids for messages that aren't present but are referred to are
stored as metadata in the database and then retrieved if we ever get
that message.
When determining the thread id for a message we also check for this
metadata so that we can thread descendants of a message together before
we receive it.
Edited by Carl Worth <cworth@cworth.org>: Split this portion of the
commit from the earlier-applied portion adding test cases.
We rename 'has_more' to 'valid' so that it can function whether
iterating in a forward or reverse direction. We also rename
'advance' to 'move_to_next' to setup parallel naming with
the proposed functions 'move_to_first', 'move_to_last', and
'move_to_previous'.
Thanks to Michal Sojka <sojkam1@fel.cvut.cz> for pointing out the
correct fix, which I verified in the freely-available WG14/N1124 draft
(from the C99 working group) which is available here:
http://www.open-std.org/JTC1/SC22/wg14/www/docs/n1124.pdf
The sequential identifiers have the advantage of being guaranteed to
be unique (until we overflow a 64-bit unsigned integer), and also take
up half as much space in the "notmuch search" output (16 columns
rather than 32).
This change also has the side effect of fixing a bug where notmuch
could block on /dev/random at startup (waiting for some entropy to
appear). This bug was hit hard by the test suite, (which could easily
exhaust the available entropy on common systems---resulting in large
delays of the test suite).
Previously we were printing a number of messages upgraded so far. The
original motivation for this was to accurately reflect the fact that
there are two passes, (so each message is processed twice and it's not
accurate to represent with a single count). But as it turns out, the
second pass takes zero time (relatively speaking) so we're still not
accounting for it.
If nothing else, the percentage-based reporting makes for a cleaner
API for the progress_notify function.
The first phase copies data from the old format to the new format
without deleting anything. This allows an old notmuch to still use the
database if the upgrade process gets interrupted. The second phase
performs the deletion (after updating the database version number). If
the second phase is interrupted, there will be some unused data in the
database, but it shouldn't cause any actual harm.
The recent support for renames in the database is our first time
(since notmuch has had more than a single user) that we have a
database format change. To support smooth upgrades we now encode a
database format version number in the Xapian metadata.
Going forward notmuch will emit a warning if used to read from a
database with a newer version than it natively supports, and will
refuse to write to a database with a newer version.
The library also provides functions to query the database format
version:
notmuch_database_get_version
to ask if notmuch wants a newer version than that:
notmuch_database_needs_upgrade
and a function to actually perform that upgrade:
notmuch_database_upgrade
Previously we had NOTMUCH_DATABASE_MODE_READ_ONLY but
NOTMUCH_STATUS_READONLY_DATABASE which was ugly and confusing. Rename
the latter to NOTMUCH_STATUS_READ_ONLY_DATABASE for consistency.
Previously, many checks were deep in the library just before a cast
operation. These have now been replaced with internal errors and new
checks have instead been added at the beginning of all top-levelentry
points requiring a read-write database.
The new checks now also use a single function for checking and
printing the error message. This will give us a convenient location to
extend the check, (such as based on database version as well).
The original wording made it sound like this function was just doing
some string manipulation. But this function actually creates new
directory documents as a side effect. So make that explicit in its
documentation.
Similar to the return value of notmuch_database_add_message, we now
enhance the return value of notmuch_database_remove_message to
indicate whether the message document was entirely removed (SUCCESS)
or whether only this filename was removed and the document exists
under other filenamed (DUPLICATE_MESSAGE_ID).
This new directory ojbect provides all the infrastructure needed to
detect when files or directories are deleted or renamed. There's still
code needed on top of this (within "notmuch new") to actually do that
detection.
This will allow applications to support the removal of messages, (such
as when a file is deleted from the mail store). No removal support is
provided yet in commands such as "notmuch new".
The existing find_doc_ids function is convenient when the caller
doesn't want to be bothered constructing a term. But when the caller
*does* have the term already, that interface is just wasteful. So we
export a lower-level interface that maps a pre-constructed term to a
document-ID iterators.
The code to map a filename to a direntry is something that we're going
to want in a future _remove_message function, so put it in a new
function _notmuch_database_filename_to_direntry .
The library interface is unchanged so far, (still just
notmuch_database_add_message), but internally, the old
_set_filename function is now _add_filename instead.
Instead of storing the complete message filename in the data portion
of a mail document we now store a 'direntry' term that contains the
document ID of a directory document and also the basename of the
message filename within that directory. This will allow us to easily
store multple filenames for a single message, and will also allow us
to find mail documents for files that previously existed in a
directory but that have since been deleted.
Some pending commits want the _split_path functionality separate from
mapping a directory to a document ID. The split_path function now
returns the basename as well as the directory name.
We're planning to have mail documents refer to directory documents for
the path of the containing directory. To support this, we need the
path in the data, (since the path in the 'directory' term can be
irretrievable as it will be the SHA1 sum of the path for a very long
path).
We'll soon have mail documents referring to their parent directory's
directory documents, so we'll need access to _find_parent_id in files
such as message.cc.
Storing the document ID of the parent of each directory document will
allow us to find all child-directory documents for a given directory
document. We will need this in order to detect directories that have
been removed from the mail store, (though we aren't yet doing this).
The recent change from storing absolute paths to relative paths means
that new directory documents will already be created, (and the old
ones will just linger stale in the database). Given that, we might as
well put a clean name on the term in the new documents, (and no real
flag day is needed).
We were already storing relative mail filenames, so this is consistent
with that. Additionally, it means that directory documents remain
valid even if the database is relocated within its containing
filesystem.
We'll soon be having multiple entry points that accept a filename
path, so we want common code for getting a relative path from a
potentially absolute path.
The function _notmuch_message_add_thread_id has been removed
from the private interface of notmuch. There's no reason for
one to keep a declaration of its prototype in the code base.
Also, lets update a commentary that referenced that function
and escaped from previous scrutiny.
Signed-off-by: Fernando Carrijo <fcarrijo@yahoo.com.br>
This patch adds a new function called notmuch_database_get_all_tags
which can be used to obtain a list of all tags from the database
(in other words, the list contains all tags from all messages). The
function produces an alphabetically sorted list.
To add support for the new function, we rip the guts off of
notmuch_message_get_tags and put them in a new generic function
called _notmuch_convert_tags. The generic function takes a
Xapian::TermIterator as argument and uses the iterator to find tags.
This makes the function usable with different Xapian objects.
Function notmuch_message_get_tags is then reimplemented to call the
generic function with message->doc.termlist_begin() as argument.
Similarly, we implement notmuch_message_database_get_all_tags, the
function calls the generic function with db->xapian_db->allterms_begin()
as argument.
Finally, notmuch_database_get_all_tags is exported through
lib/notmuch.h
Signed-off-by: Jan Janak <jan@ryngle.com>
The rudimentary aspect here is that the date ranges are specified with
UNIX timestamp values (number of seconds since 1970-01-01 UTC). One
thing that can help here is using the date program to determins
timestamps, such as:
$(date +%s -d 2009-10-01)..$(date +%s)
Long-term, we'll probably need to do our own query parsing to be able
to support directly-specified dates and also relative expressions like
"since:'2 months ago'".
Since Xapian has a limit on the maximum length of a term, we have
to check for that before trying to add the message ID as a term.
This fixes the bug reported by Mike Hommey here:
<20091120132625.GA19246@glandium.org>
I've also constructed 20 files with a range of message ID lengths
centered around the Xapian term-length limit which I'll use to seed a
new test suite soon.
If an earlier exception occurred, then it's not unexpected for the
flush to fail as well. So in that case, we'll silently catch the
exception. Otherwise, make some noise about things going wrong at the
time of flush.
We only rarely need to actually open the database for writing, but we
always create a Xapian::WritableDatabase. This has the effect of
preventing searches and like whilst updating the index.
Signed-off-by: Chris Wilson <chris@chris-wilson.co.uk>
Acked-by: Carl Worth <cworth@cworth.org>
